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BacMap specifications

Information


Unique identifier OMICS_20942
Name BacMap
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/BacMap

Maintainer


  • person_outline David Wishart

Publications for BacMap

BacMap citations

 (5)
library_books

Analysis of Spo0M function in Bacillus subtilis

2017
PLoS One
PMCID: 5325327
PMID: 28234965
DOI: 10.1371/journal.pone.0172737

[…] entative bacteria carrying the spo0M gene was obtained from the KEGG database []. Each member of this set of organisms was classified as sporulating or non-sporulating bacteria in accordance with the BacMap database [] or based on the presence of gene markers associated with the sporulation process in the genera Bacillus [] and Streptomyces [,]. The results of the analysis were represented as a ph […]

library_books

Taxonomic and chemical assessment of exceptionally abundant rock mine biofilm

2017
PeerJ
PMCID: 5562143
PMID: 28828247
DOI: 10.7717/peerj.3635

[…] given the high concentration of iron-containing minerals, but this process is missing in the results of METAGENassist analysis, most likely due to limitations of available phenotypic databases (e.g., BacMap https://www.ncbi.nlm.nih.gov/pubmed/22135301, the data source for METAGENassist, contains less than 2,000 genomes). Numerous members of genera showing iron-capturing capabilities have been dete […]

library_books

Databases for Microbiologists

2015
J Bacteriol
PMCID: 4505447
PMID: 26013493
DOI: 10.1128/JB.00330-15

[…] tive feature is that orthologs are defined in closely related genomes, which is useful for studying microevolution in prokaryotes. Visualization of bacterial chromosome maps at scale delivered by the BacMap database () is another valuable tool for comparative analysis. Specialized databases useful for genome annotation and analysis include PSORTdb (), which contains information on protein subcellu […]

library_books

PROTEUS2: a web server for comprehensive protein structure prediction and structure based annotation

2008
Nucleic Acids Res
PMCID: 2447806
PMID: 18483082
DOI: 10.1093/nar/gkn255

[…] ucture prediction and structure modeling (i.e. homology modeling) are quickly becoming a routine part of many protein analyses and proteome annotation efforts (). Annotation systems such as BASYS (), BACMAP (), PEDANT () and others all depend on large-scale secondary structure predictions to assist in identifying possible functions, to determine subcellular locations or to identify structural geno […]

library_books

Improving the accuracy of protein secondary structure prediction using structural alignment

2006
BMC Bioinformatics
PMCID: 1550433
PMID: 16774686
DOI: 10.1186/1471-2105-7-301

[…] ma to most protein chemists, secondary structure prediction is now becoming a routine part of many protein analyses and proteome annotation efforts []. Annotation systems such as PEDANT [], BASYS [], BACMAP [], PSORTB [] and others all depend on large scale secondary structure predictions to assist in identifying possible functions, to determine subcellular locations, to assess global trends in se […]


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BacMap institution(s)
Department of Computing Science, University of Alberta, Edmonton, AB, Canada; Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada; Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, AB, Canada; National Microbiology Laboratory—Public Health Agency of Canada, Winnipeg, MB, Canada
BacMap funding source(s)
Supported by Genome Alberta (a division of Genome Canada); Canadian Institutes of Health Research (CIHR).

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