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Bacter specifications


Unique identifier OMICS_16434
Name Bacter
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Stability Stable
JDK, Apache Ant
Maintained Yes




No version available



  • person_outline Timothy Vaughan

Publication for Bacter

Bacter citations


Plastid Transcript Editing across Dinoflagellate Lineages Shows Lineage Specific Application but Conserved Trends

Genome Biol Evol
PMCID: 5888634
PMID: 29617800
DOI: 10.1093/gbe/evy057

[…] st the nr database (NCBI; downloaded June 25, 2013). Here, a more stringent E-value cutoff of 1×10−10 was employed. If the taxon label for the most statistically significant hit contained the string “bacter,” the contig was removed. Finally, the resulting contigs were sorted and separated into files based on the gene name of the top BLAST hit.Putative mRNA sequences were selected from Trinity cont […]


Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera

Front Microbiol
PMCID: 5819568
PMID: 29497402
DOI: 10.3389/fmicb.2018.00067

[…] Mycolicibacter (´ter. N.L. n. acidum mycolicum, mycolic acid; N.L. masc. n. bacter, rod; N.L. masc. n. Mycolicibacter, a genus of mycolic acid containing rod-shaped bacteria).The type species is Mycolicibacter terrae.The members of the genus Mycolicibacter are commonly referr […]


The gastrointestinal microbiome and its association with the control of pathogens in broiler chicken production: A review

PMCID: 5850219
PMID: 29253263
DOI: 10.3382/ps/pex359

[…] also leading to the reduction of the population of Lactobacillus in the intestine (Lan et al., ; Danzeisen et al., ; Allen and Stanton, ; Mancabelli et al., ).It has been reported that the Firmicutes/Bacter-oidetes ratio increases when antibiotic supplements are provided. A study by Mancabelli et al. () demonstrated that the metagenome of chickens fed with antimicrobial supplements presents a grea […]


Infection after open heart surgery in Golestan teaching hospital of Ahvaz, Iran

PMCID: 5725203
PMID: 29255781
DOI: 10.1016/j.dib.2017.11.046

[…] staphylococci (24.49%). Totally, the most isolated bacteria which cause infections in patients after open heart surgery at Golestan hospital were escherichia coli (22.44%), klebsiella (4.08%), entero bacter (4.08%), streptococci (4.08%), pseudomonas aeruginosa (8.16%), coagulase positive staphylococci (10.2%), coagulase negative staphylococci (24.49%), enterococci (14.29%) and acentobacter (8.16%) […]


Evaluation of Antioxidant and Antimicrobial Activities of Ethanol Extracts of Three Kinds of Strawberries

PMCID: 5642802
PMID: 29043218
DOI: 10.3746/pnf.2017.22.3.203

[…] In microbiology, the MIC is the lowest concentration of an antimicrobial (like an antifungal, antibiotic, or bacter-iostatic) drug that will inhibit the viable growth of a microorganism after overnight incubation (). The MICs for strawberry extracts against the examined bacterial strains and fungi are presen […]


Microbiota of little penguins and short tailed shearwaters during development

PLoS One
PMCID: 5555571
PMID: 28806408
DOI: 10.1371/journal.pone.0183117

[…] ge, -0.686 (± 0.277) below STS values and LP log(Proteo) values being, on average, -1.154 (± 0.206) below STS values. No significant species effect for Bacteroidetes (P = 0.485) was noted with LP log(Bacter) values being, on average, 0.193 (± 0.248) above STS value. With time fitted as a continuous covariate there was a significant linear trend in Actinobacteria (P <0.005) common to both species w […]


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Bacter funding source(s)
This work was supported by the Allan Wilson Centre for Molecular Ecology and Evolution, the New Zealand Food Safety Science and Research Centre and Marsden grant UOA1324 from the Royal Society of New Zealand.

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