BASys specifications

Information


Unique identifier OMICS_04225
Name BASys
Alternative name Bacterial Annotation System
Interface Web user interface
Restrictions to use None
Input data DNA sequence data, an optional list of gene identification information
Input format Raw
Output data It provides extensive textual and hyperlinked image output.
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Eubacteria

BASys article

BASys citations

 (3)
2018
PMCID: 5760701

[…] provided by ncbi, conducted by using ncbi prokaryotic genome annotation pipeline, with best-placed reference protein set; gene marks+ annotation method. the draft genome was also annotated using basys bacterial annotation system. this whole-genome shotgun of k. pneumoniae awd5 has been deposited at gen bank under bio project id prjna326255 with accession no. moxk00000000., 50 ml of log phase […]

2014
PMCID: 3983303

[…] clc genomics workbench 5.1 (clc bio, denmark). the draft genome was annotated using blast2go 2.5.0 (3) and subsequently validated using rapid annotation subsystems technology (rast) (4) and the bacterial annotation system (basys) (5). multilocus sequence typing (mlst) was performed using a local blast search to identify the seven gene loci (i.e., arcc, aroe, glpf, gmk, pta, tpi, and yqil) […]

2013
PMCID: 3707602

[…] and sorting out the assemblies of m. tuberculosis strain pr05 (8). the draft genome was annotated using the automated annotation server rast (rapid annotation using subsystem technology) (9) and basys (bacterial annotation system) (10)., in de novo assembly, the generated 25,065,512 reads covered a total of 887,991,375 bp. the genome of pr05 has a g+c content of 65.6% with approximately […]

BASys institution(s)
Departments of Biological Sciences and Computing Science, University of Alberta Edmonton, AB, Canada
BASys funding source(s)
Funding for this project was provided by the AICML, the Protein Engineering Network Centres of Excellence (PENCE Inc.) and Genome Prairie (a division of Genome Canada).

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