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Bacterial small RNA target prediction software tools | Non-coding RNA data analysis

Bacterial sRNAs are a class of small regulatory RNAs involved in regulation of expression of a variety of genes. Most sRNAs act in trans via base-pairing with target mRNAs, leading to repression or activation of translation or mRNA…
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TargetRNA
Web

TargetRNA

Identifies mRNA targets of sRNA regulatory action in bacteria. TargetRNA2 uses…

Identifies mRNA targets of sRNA regulatory action in bacteria. TargetRNA2 uses several features to identify message targets of sRNA regulation, including conservation of regions of the sRNA,…

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sRNAOS
Desktop

sRNAOS

A methodology designed to identify bacterial sRNAs by incorporating the…

A methodology designed to identify bacterial sRNAs by incorporating the knowledge encoded by different sRNA prediction methods and optimally aggregating them as potential predictors. Because some of…

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sTarPicker
Web
Desktop

sTarPicker

A target prediction method for prediction of bacterial sRNA targets. The…

A target prediction method for prediction of bacterial sRNA targets. The methodology of the program is based on a two-step model of hybridization between an sRNA and a target. In the first step, the…

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sRNATarget
Web

sRNATarget

A web server for genome-scale prediction of bacterial sRNA targets. sRNATarget…

A web server for genome-scale prediction of bacterial sRNA targets. sRNATarget is based on a recently published model which uses Naive Bayes method as the supervised method and take RNA secondary…

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