BactImAS statistics

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Associated diseases

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BactImAS specifications


Unique identifier OMICS_06566
Name BactImAS
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License GNU General Public License version 2.0
Computer skills Medium
Stability Stable
Maintained Yes


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Publication for BactImAS

BactImAS in publications

PMCID: 5010025
PMID: 27572972
DOI: 10.1038/nmicrobiol.2016.77

[…] applying filters, and changing look-up tables (lut) available in imagej-based programs are more difficult to accomplish in oufti., imagej-based or icy-based solutions, such as coli-inspector or bactimas provide an integrated and user-friendly approach to analyze spatio-temporal localization patterns and/or intensity of fluorescent protein fusions in time-lapse movies, but are specific […]

PMCID: 4338811
PMID: 25691591
DOI: 10.1128/mBio.02236-14

[…] results for ~100 microcolonies., images acquired using resolve3d softworx-acquire version 4.0.0 (applied precision) were exported as 16-bit tiff files and processed using imagej 1.46 (nih) and bactimas (). background was subtracted from each fluorescence channel by deducting the fluorescence in a cell-free area. image stacks were aligned using a custom-made plugin, stackreg […]

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BactImAS institution(s)
School of Life Sciences, Swiss Federal Institute of Technology in Lausanne (EPFL), Lausanne, Switzerland

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