BADGE statistics

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Citations per year

Number of citations per year for the bioinformatics software tool BADGE
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Tool usage distribution map

This map represents all the scientific publications referring to BADGE per scientific context
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Associated diseases

This word cloud represents BADGE usage per disease context
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Popular tool citations

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Protocols

BADGE specifications

Information


Unique identifier OMICS_18103
Name BADGE
Alternative name BlAst Diagnostic Gene findEr
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format FASTA
Operating system Unix/Linux, Mac OS
Programming languages Shell (Bash)
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.2
Stability Stable
Source code URL https://codeload.github.com/TMW-bioinformatics/BADGE/tar.gz/v1.2
Maintained Yes

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Maintainer


  • person_outline Jurgen Behr

Publication for BlAst Diagnostic Gene findEr

BADGE citations

 (4)
library_books

A multi disciplinary perspective on emergent and future innovations in peer review

2017
F1000Res
PMCID: 5686505
PMID: 29188015
DOI: 10.5256/f1000research.13023.r24353

[…] equivalent to the amount of effort required to obtain them, and also ensuring that they are valued by the broader research community and assessment bodies. This could be facilitated through a simple badge incentive system, such as that designed by the Center for Open Science for core open practices ( cos.io/our-services/open-science-badges/). 3.1.4 Can the wisdom of crowds work with peer review? […]

call_split

Metaresearch for Evaluating Reproducibility in Ecology and Evolution

2017
PMCID: 5384162
PMID: 28596617
DOI: 10.1093/biosci/biw159
call_split See protocol

[…] tatement, vastly improves data availability almost 1000-fold compared with having no journal policy (Vines et al. ). Even voluntary “opt-in” incentives such as the Centre for Open Science's Open Data badge have resulted in a large increase of data availability in journals that have adopted this scheme (Kidwell et al. ). […]

library_books

Multiple Genome Sequences of Important Beer Spoiling Lactic Acid Bacteria

2016
Genome Announc
PMCID: 5054319
PMID: 27795248
DOI: 10.1128/genomeA.01077-16

[…] mes). Genomes were annotated using the NCBI Prokaryotic Genome Annotation Pipeline (PGAP) and Rapid Annotations using Subsystems Technology (RAST) (). Genomes were further analyzed with CMG-BioTools, BADGE, and PSORTb (, , ).Strain characteristics, sequencing statistics, genome information, and accession numbers are listed in . Chromosome sizes range from 1.39 Mbp for Lactobacillus lindneri to 3.4 […]

call_split

Multiple Genome Sequences of the Important Beer Spoiling Species Lactobacillus backii

2016
Genome Announc
PMCID: 5000825
PMID: 27563041
DOI: 10.1128/genomeA.00826-16
call_split See protocol

[…] tated using the NCBI Prokaryotic Genome Annotation Pipeline (PGAP) and the Rapid Annotations using Subsystems Technology (RAST) server (). Pan- and core genomes were calculated using CMG-Biotools and BADGE (, ).Strain characteristics, sequencing statistics, genome information, and accession numbers are listed in . The chromosome sizes range from 2.55 Mbp to 2.67 Mbp, with G+C contents of 40.8 to 4 […]


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BADGE institution(s)
Lehrstuhl für Technische Mikrobiologie, Technische Universität München, Freising, Germany
BADGE funding source(s)
Partially supported by the German Ministry of Economics and Technology (via AiF) and the Wifoe (Wissenschaftsförderung der Deutschen Brauwirtschaft e.V., Berlin) project AiF 17576N.

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