BADGE statistics

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Associated diseases

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BADGE specifications

Information


Unique identifier OMICS_18103
Name BADGE
Alternative name BlAst Diagnostic Gene findEr
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format FASTA
Operating system Unix/Linux, Mac OS
Programming languages Shell (Bash)
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.2
Stability Stable
Source code URL https://codeload.github.com/TMW-bioinformatics/BADGE/tar.gz/v1.2
Maintained Yes

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Maintainer


  • person_outline Jurgen Behr <>

Publication for BlAst Diagnostic Gene findEr

BADGE in publications

 (2)
PMCID: 5054319
PMID: 27795248
DOI: 10.1128/genomeA.01077-16

[…] genomes were annotated using the ncbi prokaryotic genome annotation pipeline (pgap) and rapid annotations using subsystems technology (rast) (). genomes were further analyzed with cmg-biotools, badge, and psortb (, , )., strain characteristics, sequencing statistics, genome information, and accession numbers are listed in . chromosome sizes range from 1.39 mbp for lactobacillus lindneri […]

PMCID: 5000825
PMID: 27563041
DOI: 10.1128/genomeA.00826-16

[…] using the ncbi prokaryotic genome annotation pipeline (pgap) and the rapid annotations using subsystems technology (rast) server (). pan- and core genomes were calculated using cmg-biotools and badge (, )., strain characteristics, sequencing statistics, genome information, and accession numbers are listed in . the chromosome sizes range from 2.55 mbp to 2.67 mbp, with g+c contents of 40.8 […]


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BADGE institution(s)
Lehrstuhl für Technische Mikrobiologie, Technische Universität München, Freising, Germany
BADGE funding source(s)
Partially supported by the German Ministry of Economics and Technology (via AiF) and the Wifoe (Wissenschaftsförderung der Deutschen Brauwirtschaft e.V., Berlin) project AiF 17576N.

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