BadTrIP specifications
Information
| Unique identifier | OMICS_28941 |
|---|---|
| Name | BadTrIP |
| Alternative name | BAyesian epiDemiological TRansmission Inference from Polymorphisms |
| Software type | Application/Script |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux |
| License | GNU General Public License version 3.0 |
| Computer skills | Advanced |
| Stability | Stable |
| Maintained | Yes |
Download
Versioning
No version available
Maintainer
- person_outline Nicolan de Maio
Publication for BAyesian epiDemiological TRansmission Inference from Polymorphisms
2018 PLoS Comput Biol
PMCID: 5927459
PMID: 29668677
DOI: 10.1371/journal.pcbi.1006117
BadTrIP citation
library_books
Bayesian reconstruction of transmission within outbreaks using genomic variants
2018
PLoS Comput Biol
PMCID: 5927459
PMID: 29668677
DOI: 10.1371/journal.pcbi.1006117
[…] BadTrIP is distributed as an open source package for the Bayesian phylogenetic software BEAST2 []. It can be downloaded from https://bitbucket.org/nicofmay/badtrip/ or via the BEAUti interface [] of BEAST2. […]
BadTrIP institution(s)
Nuffield Department of Medicine, University of Oxford, Oxford, UK; Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ, USA; Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK
BadTrIP funding source(s)
Supported by the Wellcome Trust and the Royal Society (grant 101237/Z/13/Z), the Bill and Melinda Gates Foundation (grant OPP1091919), a Public Health England/University of Oxford Clinical Lectureship and Oxford Martin School.
BadTrIP reviews
Be the first to review BadTrIP