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BAFBA specifications


Unique identifier OMICS_06462
Alternative name Bees Algorithm and Flux Balance Analysis


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Publication for Bees Algorithm and Flux Balance Analysis

BAFBA citations


Gene Knockout Identification Using an Extension of Bees Hill Flux Balance Analysis

Biomed Res Int
PMCID: 4385639
PMID: 25874200
DOI: 10.1155/2015/124537
call_split See protocol

[…] In this study, we used E. coli, B. subtilis, and C. thermocellum models to test the operation of the extension of BHFBA. E. coli iJR904 ( was used to test the operation of BAFBA []. The E. coli model contains 904 genes, 931 unique biochemical reactions, and 761 metabolites. We used E. coli iJR904 in this work to test the reliability of BHFBA because this model was used […]


Structural and Functional Characterization of Methicillin Resistant Staphylococcus aureus’s Class IIb Fructose 1,6 Bisphosphate Aldolase

PMCID: 4263427
PMID: 25390935
DOI: 10.1021/bi501141t

[…] d a score of 0.80 indicating that they likely belong to a single subtype., Intriguingly, when SaFBA was run through the PISA server it was shown to be most similar to the FBA from Bacillus anthracis (BaFBA) with a score of 0.88 and when compared to GlFBA both SaFBA and BaFBA scored roughly 0.70 implying that SaFBA and BaFBA likely fall into their own subtype. Using SaFBA along with the recent depo […]


Differential Bees Flux Balance Analysis with OptKnock for In Silico Microbial Strains Optimization

PLoS One
PMCID: 4105462
PMID: 25047076
DOI: 10.1371/journal.pone.0102744
call_split See protocol

[…] shows the flow of BAFBA. BAFBA is initialized by mimicking a population of bees. In identifying gene knockout strategies, a bee is represented by a binary variable to indicate the absence or the presence of genes in th […]


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BAFBA institution(s)
Artificial Intelligence and Bioinformatics Research Group, Faculty of Computing, Universiti Teknologi Malaysia, Skudai, Johor, Malaysia

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