(Thompson et al., 2011) A comprehensive benchmark study of multiple sequence alignment methods: current challenges and future perspectives. PloS one.
PMID: 21483869
(Blackshields et al., 2006) Analysis and comparison of benchmarks for multiple sequence alignment. In silico biology.
PMID: 16922695
(Taly et al., 2011) Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures. Nature protocols.
PMID: 21979275
(Kehr et al., 2014) Genome alignment with graph data structures: a comparison. BMC bioinformatics.
PMID: 24712884
(Chen and Tompa, 2010) Comparative assessment of methods for aligning multiple genome sequences. Nature biotechnology.
PMID: 20495551
(Kemena and Notredame, 2009) Upcoming challenges for multiple sequence alignment methods in the high-throughput era. Bioinformatics.
PMID: 19648142
(Chatzou et al., 2015) Multiple sequence alignment modeling: methods and applications. Briefings in bioinformatics.
PMID: 26615024