BAM-ABS specifications

Information


Unique identifier OMICS_12012
Name BAM-ABS
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data The inputs of this tool are a set of ambiguously mapped reads and a set of uniquely mapped reads from Bismark tool.
Output data The output is the most probable genomic locations for those ambiguously mapped reads. The most probable genomic location is the location which has the highest calculated probability.
Operating system Unix/Linux
Programming languages Perl
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements
SAMtools, BEDtools, g++ compiler
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Liqing Zhang

Publication for BAM-ABS

BAM-ABS institution(s)
Department of Computer Science, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA, USA; Department of Statistics, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA, USA; Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA, USA; Department of Biological Sciences, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA, USA

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