BAMBE

[…] ture. Marcus and Wooldridge reported the case of a 23-year-old woman with progressive erythema involving her entire body who later developed proximal muscle weakness, tenderness, and poikiloderma []. Bambe described a 10.5-year-old girl with muscle weakness, joint stiffness, Raynaud phenomenon, poikiloderma, and scleroderma-like skin []. After that several cases were reported of which the latest w […]

[…] oadly speaking, phylogenetics is the study of evolutionary relationships among organisms or taxon []. There are a number of programs for inferring phylogenies including, but not limited to, PAUP* [], BAMBE [], BEAST [], PHYLIP [] RAxML [] and MrBayes []. These relationships can be represented using a phylogenetic tree wherein branch lengths commonly reflect the estimated number of nucleotide subst […]

[…] best-performing software in a maximum likelihood setting. In a Bayesian framework, the basic perturbation schemes were described early [] and recently updated []. Three popular programs are MrBayes, BAMBE [], and BEAST []. Among all these programs and approaches, PHYML, GARLI, and BEAST are probably among the most efficient programs in terms of computational speed, handling of large data sets and […]

[…] eighbor or Fitch (5000 trees), a consensus tree determined using Consense and the tree drawn using Drawgram. The MultAlin alignment was also submitted to Tree-Puzzle [] with 200,000 replicates and to BAMBE [] with 200,000 cycles and 20,000 burn-in. […]