Bambino pipeline

Bambino specifications

Information


Unique identifier OMICS_00876
Name Bambino
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes

Versioning


Add your version

Documentation


Maintainer


  • person_outline Michael N. Edmonson <>

Publication for Bambino

Bambino IN pipelines

 (2)
2016
PMCID: 5058651
PMID: 27144525
DOI: 10.18632/oncotarget.9093

[…] (hg19) using bwa ([16]). pcr duplicated reads are marked and removed using picard (http://picard.sourceforge.net/). putative snvs and indels were identified by running variation detection module of bambino [15]. a putative mutation was further filtered based on the following criteria: (1) the alternative allele is absent in the paired non-tumor sample; (2) fisher exact test p-value shows […]

2016
PMCID: 5363516
PMID: 27823983
DOI: 10.18632/oncotarget.13062

[…] to the ncbi human reference genome (grch37) using bwa [16]. pcr duplicated reads were marked using picard [17]. putative snvs and indels were identified by running variation detection module of bambino [18]. all putative snvs were further filtered based on a standard set of criteria to remove the following common types of false calls: (1) the alternative allele was present in the matching […]

Bambino institution(s)
Laboratory of Population Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA

Bambino reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Bambino