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Bambino | A variant detector and alignment viewer for NGS data in the SAM/BAM format

A variant detector and graphical alignment viewer for next-generation sequencing data in the SAM/BAM format, which is capable of pooling data from multiple source files. The variant detector takes advantage of SAM-specific annotations, and produces detailed output suitable for genotyping and identification of somatic mutations. The assembly viewer can display reads in the context of either a user-provided or automatically generated reference sequence, retrieve genome annotation features from a UCSC genome annotation database, display histograms of non-reference allele frequencies, and predict protein-coding changes caused by SNPs.

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Bambino forum

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Bambino classification

Bambino specifications

Unique identifier:
OMICS_00876
Interface:
Graphical user interface
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Medium
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
Java
Stability:
Stable

Bambino distribution

versioning

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Bambino support

Documentation

Maintainer

  • Michael N. Edmonson <>

Credits

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Publications

Institution(s)

Laboratory of Population Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA

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