Bamgineer specifications


Unique identifier OMICS_17057
Name Bamgineer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A read alignment file, a list of non-overlapping genome coordinates for introduction of gains and losses, an optional file defining known haplotypes.
Input format BAM, BED, VCF
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
SAMtools, Bedtools, VCFtools, PySam, pyVCF, pyBedTools
Maintained Yes



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  • person_outline Trevor Pugh <>

Publication for Bamgineer

Bamgineer institution(s)
Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada; Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada

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