Bamgineer specifications

Unique identifier:
OMICS_17057
Interface:
Command line interface
Input data:
A read alignment file, a list of non-overlapping genome coordinates for introduction of gains and losses, an optional file defining known haplotypes.
Operating system:
Unix/Linux
Computer skills:
Advanced
Requirements:
SAMtools, Bedtools, VCFtools, PySam, pyVCF, pyBedTools
Software type:
Package/Module
Restrictions to use:
None
Input format:
BAM, BED, VCF
Programming languages:
Python
Stability:
Stable
Maintained:
Yes

versioning

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Bamgineer distribution

download

Bamgineer support

Documentation

Maintainer

  • Trevor Pugh <>

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Publications

Institution(s)

Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada; Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada

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