BAMQL specifications


Unique identifier OMICS_26885
Alternative name BAM Query Language
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format SAM, BAM
Output format SAM, BAM
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++
Computer skills Advanced
Version 1.4
Stability Stable
Requirements LLVM, CLANG, HTSlib, libuui
Maintained Yes



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  • person_outline Paul Boutros <>

Publication for BAM Query Language

BAMQL institution(s)
Ontario Institute for Cancer Research, Toronto, ON, Canada; Ontario Cancer Institute, Princess Margaret Cancer Centre/University Health Network, Toronto, ON, Canada; Department of Pharmacology & Toxicology, University of Toronto, Toronto, ON, Canada; Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada; Department of Radiation Oncology, University of Toronto, Toronto, ON, Canada
BAMQL funding source(s)
Supported by the Government of Ontario, the Prostate Cancer Canada, the Movember Foundation – Grant #RS2014-01, the Terry Fox Research Institute New Investigator Award, a CIHR New Investigator Award and the Genome Canada.

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