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BamView | Viewing mapped read alignment data in the context of the reference sequence

An interactive Java application for visualizing the large amounts of data stored for sequence reads which are aligned against a reference genome sequence. BamView supports the BAM (Binary Alignment/Map) format. It can be used in a number of contexts including SNP calling and structural annotation. BamView has also been integrated into Artemis so that the reads can be viewed in the context of the nucleotide sequence and genomic features.

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BamView forum

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BamView classification

BamView specifications

Unique identifier:
OMICS_00878
Interface:
Graphical user interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 2.0
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
Java
Computer skills:
Medium
Maintained:
Yes

BamView distribution

versioning

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No versioning.

BamView support

Maintainer

  • Tim Carver <>

Credits

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Publications

Institution(s)

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK

Funding source(s)

Wellcome Trust through their funding of the Pathogen Genomics group at the Wellcome Trust Sanger Institute (WT 085775/Z/08/Z)

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