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Citations per year

Number of citations per year for the bioinformatics software tool Barista

Tool usage distribution map

This map represents all the scientific publications referring to Barista per scientific context
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Barista specifications


Unique identifier OMICS_09173
Name Barista
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


No version available


  • person_outline Marina Spivak

Publication for Barista

Barista citations


Open source libraries and frameworks for mass spectrometry based proteomics: A developer's perspective☆

Biochim Biophys Acta
PMCID: 3898926
PMID: 23467006
DOI: 10.1016/j.bbapap.2013.02.032

[…] were developed in Java. PeptideClassifier can classify shotgun proteomics data from any organism presented on popular databases such as FlyBase , Ensembl and RefSeq .Finally, Barista is a protein identification algorithm that combines two different steps (PSM verification and protein inference) into a single learning algorithm. The algorithm produces as output three ranke […]


A feedback framework for protein inference with peptides identified from tandem mass spectra

Proteome Sci
PMCID: 3776439
PMID: 23164319
DOI: 10.1186/1477-5956-10-68

[…] and then proteins are inferred by assembling these identified peptides. The other group combines protein inference with peptide identification, identifying peptides and proteins simultaneously [-]. A Barista model [] has been built to formulate the protein inference as an optimization problem. A tripartite graph is used to represent the protein inference problem, with layers corresponding to spect […]

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Barista institution(s)
Department of Genome Sciences, University of Washington, Seattle, WA, USA

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