Barista statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool Barista
info

Tool usage distribution map

This map represents all the scientific publications referring to Barista per scientific context
info info

Associated diseases

info

Popular tool citations

chevron_left Protein inference chevron_right
Want to access the full stats & trends on this tool?

Barista specifications

Information


Unique identifier OMICS_09173
Name Barista
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Marina Spivak

Publication for Barista

Barista citations

 (2)
library_books

Open source libraries and frameworks for mass spectrometry based proteomics: A developer's perspective☆

2014
Biochim Biophys Acta
PMCID: 3898926
PMID: 23467006
DOI: 10.1016/j.bbapap.2013.02.032

[…] unizh.ch/software.html) were developed in Java. PeptideClassifier can classify shotgun proteomics data from any organism presented on popular databases such as FlyBase , Ensembl and RefSeq .Finally, Barista is a protein identification algorithm that combines two different steps (PSM verification and protein inference) into a single learning algorithm. The algorithm produces as output three ranke […]

library_books

A feedback framework for protein inference with peptides identified from tandem mass spectra

2012
Proteome Sci
PMCID: 3776439
PMID: 23164319
DOI: 10.1186/1477-5956-10-68

[…] and then proteins are inferred by assembling these identified peptides. The other group combines protein inference with peptide identification, identifying peptides and proteins simultaneously [-]. A Barista model [] has been built to formulate the protein inference as an optimization problem. A tripartite graph is used to represent the protein inference problem, with layers corresponding to spect […]


Want to access the full list of citations?
Barista institution(s)
Department of Genome Sciences, University of Washington, Seattle, WA, USA

Barista reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Barista