Base-By-Base protocols

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description
Base-By-Base computational protocol

Base-By-Base specifications

Information


Unique identifier OMICS_03733
Name Base-By-Base
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License GNU General Public License version 2.0
Computer skills Medium
Version 2.0
Stability Stable
Maintained Yes

Versioning


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Maintainer


  • person_outline CodonStatistics Team <>

Publications for Base-By-Base

Base-By-Base IN pipeline

2007
PMCID: 1964790
PMID: 17650322
DOI: 10.1186/1743-422X-4-76

[…] profilin 3 (np_083579); rattus norvegicus profilin 1 (np_071956), profilin 2 (np_110500), and profilin 3 (xp_001065833). multiple sequence alignments and percent identity tables were created with base-by-base [33] using the t-coffee alignment algorithm [34] with minor manual adjustments to the profilin alignment based on structural analysis., phylogenetic trees were constructed from 14 […]

Base-By-Base institution(s)
Biochemistry and Microbiology, University of Victoria, Victoria, BC, Canada
Base-By-Base funding source(s)
This work was funded by a Canadian NSERC Discovery grant.

Base-By-Base review

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Brynne Gourlay

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Desktop
I'm using this to compare a few species and so far so good. It has no trouble running on my old and slow computer as well.