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BioArray Software Environment BASE

A comprehensive free web-based database LIMS solution for tracking of information and data generated in sequencing and microarray experiments from sample to analysis. The information management system tracks all material from biosource, via sample and through extraction and labelling to raw data and analysis. All items in BASE can be annotated and the annotations can be used as experimental factors in downstream analysis. BASE stores all microarray experiment related data regardless if analysis tools for specific techniques or data formats are readily available. The BASE team is committed to continue improving and extending BASE to make it usable for even more experimental setups and techniques, and we encourage other groups to target their specific needs leveraging on the infrastructure provided by BASE.

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BASE classification

BASE specifications

Software type:
Toolkit/Suite
Restrictions to use:
None
License:
GNU General Public License version 3.0
Version:
3.7
Maintained:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable

BASE distribution

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BASE support

Documentation

Maintainer

  • Jari Häkkinen <>

Credits

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Publications

Institution(s)

Department of Oncology, Clinical Sciences, Lund University, Lund, Sweden; CREATE Health Strategic Centre for Translational Cancer Research, Lund University, Lund, Sweden; Department of Theoretical Physics, Lund University, Lund, Sweden

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