BLASR specifications

Information


Unique identifier OMICS_05134
Name Basic Local Alignment with Successive Refinement
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format FASTA/FASTQ
Biological technology Pacific Biosciences, Oxford Nanopore
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


BLASR article

BLASR citation

2017
PMCID: 5539568

[…] visualizations were constructed by circos (version 0.69) software package (krzywinski et al., 2009). sequence of contigs from different assemblies was mapped to the reference genome sequence by blasr using default parameters (chaisson and tesler, 2012)., sequences of core proteins, virulence proteins, and seven house-keeping genes of b. pseudomallei were retrieved, respectively, […]

BLASR institution(s)
Department of Mathematics, University of California, San Diego, CA, La Jolla, USA

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