Basic4Cseq statistics

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Associated diseases

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Basic4Cseq specifications

Information


Unique identifier OMICS_05202
Name Basic4Cseq
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU Lesser General Public License version 3.0
Computer skills Advanced
Version 1.16.0
Stability Stable
Requirements
methods, stats, graphics, GenomicRanges, utils, Biostrings, grDevices, GenomicAlignments, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Ecoli.NCBI.20080805, caTools, R(>=3.4), RCircos
Maintained Yes

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Documentation


Publication for Basic4Cseq

Basic4Cseq in publication

PMCID: 5052795
PMID: 27677335
DOI: 10.1038/ncomms12983

[…] analyses. statistical significant interactions (q<0.05, fdr) were detected using r3cseq using a non-overlapping window approach (window size=5 kb). signal plots of 4c data were generated using basic4cseq. detected interactions within dna amplified regions were excluded. interactions were then mapped to genes, using promoters (+/− 2.5 kb from annotated tsss from gencode v19) overlapping […]


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Basic4Cseq institution(s)
Institute of Medical Informatics, University of Münster, Münster, Germany; Institute of Molecular Tumorbiology, University of Münster, Münster, Germany

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