BATCH-GE specifications

Unique identifier:
OMICS_12977
Interface:
Command line interface
Input data:
NGS-derived sequencing data
Output data:
BATCH-GE generates a detailed report on genome editing efficiencies for every sample analysed, information about HDR and visualization of the reads in the UCSC Genome Browser.
Operating system:
Unix/Linux
License:
Other
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTQ, CSV, BED
Output format:
TXT
Programming languages:
Perl
Computer skills:
Advanced
Maintained:
Yes

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BATCH-GE distribution

download

BATCH-GE support

Documentation

Maintainer

  • Andy Willaert <>

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Publications

Institution(s)

Center for Medical Genetics, Ghent University Hospital, Ghent, Belgium

Funding source(s)

This work was supported by the Ghent University Methusalem grant BOF08/01M01108 and by the Fund for Scientific Research – Flanders FWOOPR2013025301.

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