BATCH-GE specifications


Unique identifier OMICS_12977
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data NGS-derived sequencing data
Input format FASTQ, CSV, BED
Output data BATCH-GE generates a detailed report on genome editing efficiencies for every sample analysed, information about HDR and visualization of the reads in the UCSC Genome Browser.
Output format TXT
Operating system Unix/Linux
Programming languages Perl
License Other
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Andy Willaert <>

Publication for BATCH-GE

BATCH-GE institution(s)
Center for Medical Genetics, Ghent University Hospital, Ghent, Belgium
BATCH-GE funding source(s)
This work was supported by the Ghent University Methusalem grant BOF08/01M01108 and by the Fund for Scientific Research – Flanders FWOOPR2013025301.

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