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BatchI specifications


Unique identifier OMICS_32658
Name BatchI
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Version 2.0
Stability Stable
Source code URL
Maintained Yes




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  • person_outline Joanna Polanska

Publication for BatchI

BatchI citations


Testing Phylogenetic Hypotheses of the Subgenera of the Freshwater Crayfish Genus Cambarus (Decapoda: Cambaridae)

PLoS One
PMCID: 3458831
PMID: 23049950
DOI: 10.1371/journal.pone.0046105

[…] ogeny. None of the burrowing Jugicambarus species sampled group together in the phylogeny. The three Jugicambarus burrowers that do not group with other Jugicambarus species, C. (J.) gentryi, C. (J.) batchi, and C. (J.) monogalensis, have strongly supported sister relationships with burrowing species from other subgenera (Puncticambarus and Depressicambarus).Erebicambarus (all species in clade 7, […]


Fine mapping of a QTL for ear size on porcine chromosome 5 and identification of high mobility group AT hook 2 (HMGA2) as a positional candidate gene

PMCID: 3337325
PMID: 22420340
DOI: 10.1186/1297-9686-44-6

[…] 3: yijkl=μ+batchi+genderj+PPARDk+βcwijkl+CGLg+eijkl;Model 4: yijklg=μ+batchi+genderj+PPARDk+βcwijkl+CGLg+Caa+Cdd+eijkl;where yijkl is the observation for ear size; μ is the overall mean for ear size; batchi is the fixed effect of the ith batch (i = 1, 2, 3, 4, 5, 6); genderj is the fixed effect of the jth sex (j = 1, 2); PPARDk is the fixed effect of the kith genotype of PPARD (k = 1, 2, 3); CGLg […]

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BatchI institution(s)
Institute of Automatic Control, Silesian University of Technology, Gliwice, Poland; Yale School of Medicine, Yale University, CT, USA; Institute of Informatics, Silesian University of Technology, Gliwice, Poland
BatchI funding source(s)
Supported by National Science Center OPUS grant no. UMO-2015/19/B/ST6/01736, Harmonia grant no. DEC2013/08/M/ST6/00924 and OPUS grant no. 2016/21/B/ST6/02153.

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