BATISCAF

Aims to filter out repeated and short contigs. BATISCAF is a software that consists of three steps: (1) filtering out potential repeats via ILP; (2) constructing backbone scaffolding for potentially unique contigs; or (3) inserting multiple copies of potential repeats into backbone scaffolds. This tool offers a method for solving the problem of minimal length repeat and short contig removal after which the problem of scaffolding becomes trivial.

BATISCAF specifications

Desktop

Information

Unique identifier	OMICS_29953
Name	BATISCAF
Alternative name	BAd conTIg removal SCAFfolding
Software type	Application/Script
Interface	Command line interface
Restrictions to use	None
Operating system	Unix/Linux
Programming languages	Python
Computer skills	Advanced
Stability	Stable
Maintained	Yes

Download

Versioning

No version available

Maintainer

Igor Mandric

Publication for BAd conTIg removal SCAFfolding

Solving scaffolding problem with repeats.

BioRxiv

DOI: 10.1101/330472

BATISCAF institution(s)

Department of Computer Science, Georgia State University, Atlanta, GA, USA

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