BatMeth statistics

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Citations per year

Citations chart

Popular tool citations

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Tool usage distribution map

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Associated diseases

Associated diseases

BatMeth specifications


Unique identifier OMICS_00574
Name BatMeth
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format FASTQ
Output format Custom text format, PDF
Operating system Unix/Linux
Programming languages C, C++
License MIT License
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Wing Kin Sung <>

Publication for BatMeth

BatMeth in publications

PMCID: 4652484
PMID: 26576456
DOI: 10.1186/1471-2164-16-S11-S2

[…] dna sequence and finds a matching position for it in a reference genome. many mapping programs suitable for bisulfite treated short reads exist. these include bismark [], bsmap [], biss from ngm [], batmeth [], and bs-seeker2 []. these programs work by first finding a potential location for the read using hashing or a string index. the next step is to compute a score for the read., […]

PMCID: 4009243
PMID: 24839440
DOI: 10.1155/2014/472045

[…] challenge such as maq [], bismark [], bsmap [], pash [], rmap [], gsnap [], novoalign [], bfast [], brat-bw [], methylcoder [], cokusalignment [], bs-seeker [], bs-seeker2 [], segemehl [], biss [], batmeth [], and the latest one erne-bs5 []. the majority of these bisulfite sequencing mappers first conduct some sequence conversions (e.g., cs to ts and gs to as) either on the reads […]

PMCID: 3491408
PMID: 23092546
DOI: 10.1186/gb-2012-13-10-419

[…] data, which also has the advantage of improving the accuracy of methylation calls., the special issue now adds a number of powerful new tools to assist those working with dna methylation data. batmeth [] is a mapper for illumina and solid bisulfite sequencing reads, and is faster and more accurate than existing methods. bsmooth [] takes your bisulfite sequencing data and tells […]

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BatMeth institution(s)
Department of Computer Science, National University of Singapore, Singapore; NUS Graduate School for Integrative Sciences and Engineering, (CeLS), Singapore; Genome Institute of Singapore, Genome, Singapore; Department of Biological Sciences, National University of Singapore, Singapore; Joint Genome Institute, Walnut Creek, CA, USA

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