Bayesb statistics

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Bayesb specifications


Unique identifier OMICS_20593
Name Bayesb
Software type Application/Script
Interface Command line interface
Restrictions to use None
Computer skills Advanced
Stability No
Maintained No

Publication for Bayesb

Bayesb in publications

PMCID: 5945574
PMID: 29748895
DOI: 10.1186/s12284-018-0223-4

[…] of genomic prediction for hybrid performance in a rice nc ii population where 115 inbred varieties were crossed with five male sterile lines using six representative methods including gblup, lasso, bayesb, pls, svm and rkhs. the genotypes of 120 inbred parents and eight agronomic traits of 575 hybrids were measured. we also assessed the influence of the statistical method, heritability, marker […]

PMCID: 5930871
PMID: 29720082
DOI: 10.1186/s12711-018-0393-y

[…] et al. [] showed that there were no structural differences between survivors and controls within the analysed populations., the phenotype of survivor/control (0/1) was analysed using the bayesb method by fitting all snps simultaneously, in gensel [], separately for each dataset. the proportion of snps assumed to have no effect on survival was set to 0.999 in order to keep the number […]

PMCID: 5893689
PMID: 29670457
DOI: 10.1007/s11032-018-0802-5

[…] by sequencing yielded more than 258,000 single-nucleotide polymorphism markers, which revealed population structure between subpanels. we then fitted and compared genomic selection models bayesa, bayesb, bayescĎ€, bayeslasso, bayes ridge regression and random regression best linear unbiased predictor. the resulting predictive abilities varied little between the different models, […]

PMCID: 5889553
PMID: 29625549
DOI: 10.1186/s12711-018-0387-9

[…] of genomic prediction of feed efficiency component traits in duroc pigs using single nucleotide polymorphism (snp) panels of 80k, imputed 650k, and whole-genome sequence variants using gblup, bayesb and bayesrc methods, with the ultimate purpose to determine the optimal method to increase genetic gain for feed efficiency in pigs., phenotypes of average daily feed intake (adfi), average […]

PMCID: 5862491
PMID: 29561877
DOI: 10.1371/journal.pone.0194683

[…] from segregating snps were replicated 8 times. snps corresponding to qtl were masked from a 600k panel comprising snps with maf > 0.05 or a 50k evenly spaced subset of these. compared with bayesb and a modified antibayesb, bayesn improved the accuracy of prediction up to 2.0% with 50k snps and up to 7.0% with 600k snps, most improvements occurring in the rare qtl scenario. computing […]

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Bayesb institution(s)
Singapore Immunology Network, Biopolis, Singapore; Data Mining Department, Institute for Infocomm Research, Singapore; Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore
Bayesb funding source(s)
Supported by a joint council research grant from the Joint Council Office (JCO) of A *STAR Singapore.

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