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Information


Unique identifier OMICS_23955
Name BayesFold
Interface Web user interface
Restrictions to use None
Programming languages Python
Computer skills Basic
Maintained No

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Publication for BayesFold

BayesFold citations

 (3)
library_books

The Plausibility of RNA Templated Peptides: Simultaneous RNA Affinity for Adjacent Peptide Side Chains

2012
J Mol Evol
PMCID: 3346935
PMID: 22538927
DOI: 10.1007/s00239-012-9501-8

[…] bably interact with peptide, are adjacent to such site nucleotides or linked to them within a folding domain.There are multiple RNA folds that bind His–Phe. Two-dimensional structure prediction using BayesFold (Knight et al. ) and protection or binding interference/enhancement after chemical probing indicate two recurring motifs in the RNA random region which are likely important for binding to Hi […]

library_books

Specific RNA binding to ordered phospholipid bilayers

2006
Nucleic Acids Res
PMCID: 1449910
PMID: 16641318
DOI: 10.1093/nar/gkl220

[…] type of phospholipid–RNA interface, as discussed above.In contrast, RNA binding to lipid rafts exhibits RNA-structure specificity. The computed RNA secondary structures in the table are the output of BayesFold, a Bayesian folding program (). The highest level of binding (17 or 16%) was observed for RNA 10 and RNA 67-2, a derivative of RNA 10 having 8 nt changed within the left-hand hairpin loop. A […]

library_books

A diminutive and specific RNA binding site for L tryptophan

2005
Nucleic Acids Res
PMCID: 1236723
PMID: 16186130
DOI: 10.1093/nar/gki861

[…] n a 26 nt long segment is shown in where shaded positions are at least 70% conserved. Frequencies are adjusted for the initial bias (7:1:1:1) in the doped pool. also shows the relevant segment of a BayesFold prediction for the structure common to the 59 available aligned sequences. The re-mutagenized and re-selected RNAs recaptured the parental loop structure of Trp 20–605 (), as we had intended […]

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BayesFold institution(s)
Department of Molecular, Cellular, and Developmental Biology, University of Colorado, Boulder, CO, USA

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