BACH specifications

Unique identifier:
OMICS_11389
Software type:
Package/Module
Restrictions to use:
None
Output data:
BACH produces, via MCMC computation, the posterior distribution of three-dimensional (3D) chromosomal structure.
Programming languages:
R
Stability:
Stable
Maintained:
Yes
Name:
Bayesian 3D constructor for Hi-C data
Interface:
Command line interface, Graphical user interface
Input data:
BACH takes the Hi-C contact matrix and local genomic features (restriction enzyme cutting frequencies, GC content and sequence uniqueness) as input.
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Requirements:
GNU scientific

versioning

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BACH support

Maintainer

  • Ming Hu <>

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Publications

Institution(s)

Department of Statistics, Harvard University, Cambridge, MA, USA; Department of Biostatistics and Bioinformatics, Rollins School of Public Health, Emory University, Atlanta, GA, USA; Ludwig Institute for Cancer Research, La Jolla, CA, USA; Medical Scientist Training Program, University of California, San Diego, La Jolla, CA, USA; Biomedical Sciences Graduate Program, University of California, San Diego, La Jolla, CA, USA; Bioinformatics and Systems Biology Graduate Program, University of California, San Diego, La Jolla, CA, USA; University of California, San Diego School of Medicine, Department of Cellular and Molecular Medicine, Institute of Genomic Medicine, UCSD Moores Cancer Center, La Jolla, CA, USA

Funding source(s)

This work was supported by the Ludwig Institute for Cancer Research, US National Institutes of Health grants R01HG005119, R01HG003991 and 5R01GM080625.

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