BIMBAM specifications

Information


Unique identifier OMICS_04401
Name BIMBAM
Alternative name Bayesian IMputation-Based Association Mapping
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A genotype file and a phenotype file
Input format TXT
Output data A log file, a single-SNP Bayes factors file, a multi-SNP Bayes factors file and a summary file
Output format LOG, TXT
Operating system Unix/Linux
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Documentation


BIMBAM article

BIMBAM citation

2016
PMCID: 5111214

[…] associated to the colour phenotypes. those above 99% empirical quantile for bf (bf0.99 snps) were considered to have the strongest associations. imputation of the missing genotypes was performed in bimbam v1.0 [55]., genetic differences among populations were tested using a g–test [56] and estimates of f st were obtained following the method of [57] implemented in genepop v4.2.2 [58]. to better […]

BIMBAM institution(s)
Department of Statistics, University of Washington, Seattle, WA, USA
BIMBAM funding source(s)
This work was supported by NIH grant RO1 HG02585–01.

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