BitSeq specifications

Information


Unique identifier OMICS_01269
Name BitSeq
Alternative name Bayesian inference of transcripts from sequencing data
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++, R
Computer skills Advanced
Stability Stable
Requirements GNU make, g++, zlib
Maintained Yes

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Documentation


Maintainer


  • person_outline Magnus Rattray <>

BitSeq article

BitSeq citation

2015
PMCID: 4511015

[…] in sam or bam format, sorted by read name (randomized). we have used the command-line version of bitseq (version 0.7.5), but an r/bioconductor version is also available., the first step in bitseq is to parse the alignment file to calculate probabilities of individual reads originating from individual transcripts:parsealignment \ <alignments_transcriptome> --trseqfile […]

BitSeq institution(s)
School of Computer Science, University of Manchester, Oxford Road, Manchester, UK; Helsinki Institute for Information Technology HIIT, Department of Computer Science, University of Helsinki, University of Helsinki, Finland; Department of Computer Science and Sheffield Institute for Translational Neuroscience, University of Sheffield, Sheffield, UK

BitSeq review

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Andrew Miller

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Desktop
A great tool for RNA-seq analyses !