Protocols

BaySICS specifications

Information


Unique identifier OMICS_15320
Name BaySICS
Alternative name Bayesian Statistical Inference of Coalescent Simulations
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Windows
Computer skills Medium
Version 1.9.7.9.5
Stability Stable
Maintained Yes

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Versioning


No version available

Documentation


Maintainer


  • person_outline Edson Sandoval-Castellanos

Publication for Bayesian Statistical Inference of Coalescent Simulations

BaySICS citation

call_split

Significant loss of mitochondrial diversity within the last century due to extinction of peripheral populations in eastern gorillas

2018
Sci Rep
PMCID: 5917027
PMID: 29695730
DOI: 10.1038/s41598-018-24497-7
call_split See protocol

[…] observed datasets (PODs) to assess the statistical power of our samples and methodology. All analyses were performed separately for Grauer’s and Mountain gorilla mitochondrial genomes in the software BaySICS v1.9 using the estimated gorilla mutation rate (1.28 × 10−8), no gamma parameter, and a Ts/Tv bias of 0.75 and 0.933 in mountain and Grauer’s gorillas, respectively (as identified by the selec […]

BaySICS institution(s)
Department of Bioinformatics and Genetics, Swedish Museum of Natural History, Stockholm, Sweden; Department of Zoology, Stockholm University, Stockholm, Sweden
BaySICS funding source(s)
This work was supported by Formas via the ERA-NET Biodiversa project Climigrate and the Strategic Research Programme Ekoklim at Stockholm University, by the Swedish Research Council, by Stiftelsen Lars Hiertas Minne, as well as the project “IKY scholarships” financed by the operational program “Education and Lifelong Learning” of the European Social Fund (ESF) and the NSRF 2007-2013.

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