Dataset features

Specifications


Dataset type: Other
Number of samples: 20
Release date: Oct 10 2012
Last update date: Jan 9 2013
Access: Public
Genes: TP53
Taxon: Homo sapiens
Dataset link Identification of Proteins Binding Coding and Non-coding Human RNAs using Protein Microarrays

Experimental Protocol


Sense and antisense strands for 10 RNA transcripts representing protein coding RNAs TP53, HRAS, MYC, BCL2 and non-coding sequences PWRN1, SOX2OT, OCC1, IGF2RNC, lncRBM26 and DLEU1 were in vitro transcribed, labeled with Cy5 and independently hybridized on human protein microarrays. The labeling process was optimized in order to achieve ~ 3 pmol dye per every microgram RNA with average efficacy of 1 dye molecule for approximately every 850 bp RNA to minimally influence RNA native structure and at the same time yield in signal intensities that were readily visualized.

Repositories


GEO

GSE34794

ArrayExpress

E-GEOD-34794

BioProject

PRJNA151039

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Contact


Kun Qu