Dataset features

Specifications


Application: Gene expression microarray analysis, DNA methylation array analysis
Number of samples: 47
Release date: Aug 26 2010
Last update date: Mar 20 2012
Access: Public
Taxon: Mus musculus
Dataset link Genome-wide analysis of expression and DNA methylation at CpG-island-associated sense-antisense transcript loci in mouse

Experimental Protocol


Twelve tissues (brain, thymus, heart, lung, liver, spleen, stomach, kidney, small intestine, testis, and placentae [10.5 and 13.5 days postcoitum (dpc)]) of C57BL/6J Jc1 and a mouse fibroblast cell line (SL10) were used for the mouse expression oligo-microarray. The expression array data were obtained by both oligo-dT and random priming methods, except for SL10 (olio-dT only). Twelve tissues (brain, thymus, heart, lung, liver, spleen, stomach, kidney, small intestine, testis, and placentae [10.5 and 13.5 days postcoitum (dpc)]) were used for DIP chip experiments. Nine of twelve tissues were separately analyzed classified on the basis of sex. A technical duplication of DIP chip analysis was performed by using the same genomic DNA of male kidney.

Repositories


GEO

GSE14392

ArrayExpress

E-GEOD-14392

BioProject

PRJNA111365

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Contact


Yutaka Watanabe