bcbio-nextgen specifications

Information


Unique identifier OMICS_01121
Name bcbio-nextgen
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
Parallelization MapReduce
License MIT License
Computer skills Advanced
Stability Stable
High performance computing Yes
Maintained Yes

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bcbio-nextgen citation

2017
PMCID: 5725088

[…] (database of genotypes and phenotypes) [35], accessions phs000328.v2.p1 and phs000573.v1.p1., alignment and variant calling was performed within the bcbio framework (https://github.com/chapmanb/bcbio-nextgen). reads were aligned to the hg19 human reference genome assembly using bwa [36], no realignment or recalibration was performed. duplicate reads were removed from final bam files using […]

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