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bcbio-nextgen

A python toolkit providing best-practice pipelines for fully automated high throughput sequencing analysis. You write a high level configuration file specifying your inputs and analysis parameters. This input drives a parallel pipeline that handles distributed execution, idempotent processing restarts and safe transactional steps. The goal is to provide a shared community resource that handles the data processing component of sequencing analysis, providing researchers with more time to focus on the downstream biology.

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bcbio-nextgen classification

bcbio-nextgen specifications

Unique identifier:
OMICS_01121
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
Parallelization:
MapReduce
Computer skills:
Advanced
High performance computing:
Yes
Software type:
Pipeline/Workflow
Restrictions to use:
None
Programming languages:
Python
License:
MIT License
Stability:
Stable
Maintained:
Yes

bcbio-nextgen distribution

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