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Bcepred specifications

Information


Unique identifier OMICS_05736
Name Bcepred
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Unique identifier OMICS_05736
Name Bcepred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for Bcepred

Bcepred citations

 (48)
library_books

Cross species analysis of apical asparagine rich protein of Plasmodium vivax and Plasmodium knowlesi

2018
Sci Rep
PMCID: 5893618
PMID: 29636493
DOI: 10.1038/s41598-018-23728-1

[…] prediction, expression and antibody production. the in silico prediction of linear b-cell epitopes in the n-terminus was conducted by using the bcpred server (http://www.imtech.res.in/raghava/bcepred/bcepred_team.html), as well as the antibody epitope prediction server at the iedb analysis resource, by using the emini surface accessibility prediction model […]

library_books

Virulence factors of Moraxella catarrhalis outer membrane vesicles are major targets for cross reactive antibodies and have adapted during evolution

2018
Sci Rep
PMCID: 5862889
PMID: 29563531
DOI: 10.1038/s41598-018-23029-7

[…] results., sequences of immunoreactive proteins were searched for potential epitopes using 15 predictive approaches: aap, bcpred, bepipred, cbtope, cobepro, fbcpred, igpred, svmtrip, as well as bcepred based on seven amino acid physico-chemical scales, hydrophilicity, flexibility, accessibility, turns, antigenic propensity, exposed residues and polarity. these results were summarized […]

library_books

Homology modeling and epitope prediction of Der f 33

2018
Braz J Med Biol Res
PMCID: 5875910
PMID: 29561952
DOI: 10.1590/1414-431X20186213

[…] (for the entire structure) and local (per residue) error estimates based on one single model. visualization of tertiary structure was performed using ucsf chimera 1.10.2 ()., abcpred (), bcpreds (), bcepred (), and bioinformatics predicted antigenic peptides (bpap) system () were used for predicting b cell epitopes of der f 33. abcpred predicted b cell epitopes in antigen sequences, using […]

library_books

A novel B and helper T cell epitopes based prophylactic vaccine against Echinococcus granulosus

2017
PMCID: 5915707
PMID: 29713601
DOI: 10.15171/bi.2018.06

[…] been served with the prediction of be and te. in order to improve the accuracy of computational epitope mapping, we used different online predictor servers, including ellipro lbtope, bepipred v1.0, bcepred, abcpred, and immune epitope database (iedb) server (window size 7, threshold 1.0).- the bepipred can predict potential epitopes based on a combination of a hidden markov model […]

library_books

Hap2, a novel gene in Babesia bigemina is expressed in tick stages, and specific antibodies block zygote formation

2017
PMCID: 5683354
PMID: 29132437
DOI: 10.1186/s13071-017-2510-0

[…] used for rabbit immunization to generate two monospecific polyclonal antisera. the peptides were designed by using the bioinformatics programs abcpred (http://www.imtech.res.in/raghava/abcpred/), bcepred (http://www.imtech.res.in/raghava/bcepred/) and iedb (http://www.iedb.org/). two peptide sequences with the highest value in all three b cell epitope and antigenic algorithms were selected […]

library_books

Analysis of predicted B and T cell epitopes in Der p 23, allergen from Dermatophagoides pteronyssinus

2017
Bioinformation
PMCID: 5651224
PMID: 29081610
DOI: 10.6026/97320630013307

[…] sequence from genbank database and then analyzed it using a combination of web-based sequence analysis tools including the immune epitope database (iedb), protparam, bcpreds, abcpred, bepipred, bcepred among others to predict the physiochemical properties and epitope spectra of the der p 23 allergen. we then built 3d models of the predicted b-cell epitopes, t cell epitopes and der p 23 […]


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