Bcepred protocols

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Bcepred specifications


Unique identifier OMICS_05736
Name Bcepred
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


Add your version


Unique identifier OMICS_05736
Name Bcepred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for Bcepred

Bcepred in pipeline

PMCID: 4742598
PMID: 26866023
DOI: 10.7774/cevr.2016.5.1.41

[…] scratch server (http://scratch.proteomics.ics.uci.edu/). the dinnna online software was used for disulfide bound prediction (http://clavius.bc.edu/~clotelab/dianna/)., web-based algorithm servers, bcepred (http://www.imtech.res.in/raghava/bcepred/) and discotope (http://www.cbs.dtu.dk/services/discotop/), were used for prediction of continuous and discontinue b-cell epitopes, respectively. mhc […]

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Bcepred in publications

PMCID: 5893618
PMID: 29636493
DOI: 10.1038/s41598-018-23728-1

[…] prediction, expression and antibody production. the in silico prediction of linear b-cell epitopes in the n-terminus was conducted by using the bcpred server (http://www.imtech.res.in/raghava/bcepred/bcepred_team.html), as well as the antibody epitope prediction server at the iedb analysis resource, by using the emini surface accessibility prediction model […]

PMCID: 5862889
PMID: 29563531
DOI: 10.1038/s41598-018-23029-7

[…] results., sequences of immunoreactive proteins were searched for potential epitopes using 15 predictive approaches: aap, bcpred, bepipred, cbtope, cobepro, fbcpred, igpred, svmtrip, as well as bcepred based on seven amino acid physico-chemical scales, hydrophilicity, flexibility, accessibility, turns, antigenic propensity, exposed residues and polarity. these results were summarized […]

PMCID: 5875910
PMID: 29561952
DOI: 10.1590/1414-431X20186213

[…] (for the entire structure) and local (per residue) error estimates based on one single model. visualization of tertiary structure was performed using ucsf chimera 1.10.2 ()., abcpred (), bcpreds (), bcepred (), and bioinformatics predicted antigenic peptides (bpap) system () were used for predicting b cell epitopes of der f 33. abcpred predicted b cell epitopes in antigen sequences, using […]

PMCID: 5915707
PMID: 29713601
DOI: 10.15171/bi.2018.06

[…] been served with the prediction of be and te. in order to improve the accuracy of computational epitope mapping, we used different online predictor servers, including ellipro lbtope, bepipred v1.0, bcepred, abcpred, and immune epitope database (iedb) server (window size 7, threshold 1.0).- the bepipred can predict potential epitopes based on a combination of a hidden markov model […]

PMCID: 5683354
PMID: 29132437
DOI: 10.1186/s13071-017-2510-0

[…] used for rabbit immunization to generate two monospecific polyclonal antisera. the peptides were designed by using the bioinformatics programs abcpred (http://www.imtech.res.in/raghava/abcpred/), bcepred (http://www.imtech.res.in/raghava/bcepred/) and iedb (http://www.iedb.org/). two peptide sequences with the highest value in all three b cell epitope and antigenic algorithms were selected […]

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