Protocols

BCLUST specifications

Information


Unique identifier OMICS_24898
Name BCLUST
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data A file of large-scale gene expression row data and a file with the corresponding error data.
Operating system Unix/Linux, Windows
Programming languages C++
Computer skills Advanced
Stability Stable
Maintained Yes

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Versioning


No version available

Documentation


Maintainer


  • person_outline Hongyu Zhao

Publication for BCLUST

BCLUST citations

 (2)
library_books

Pan Genomic Analysis Permits Differentiation of Virulent and Non virulent Strains of Xanthomonas arboricola That Cohabit Prunus spp. and Elucidate Bacterial Virulence Factors

2017
Front Microbiol
PMCID: 5389983
PMID: 28450852
DOI: 10.3389/fmicb.2017.00573

[…] reciprocal all-against-all BLAST search was performed using the blastAll package. BLAST distance between sequences was obtained using the bDist package. A hierarchical clustering was performed using bClust, and a complete linkage function was selected with a liberal threshold of 0.80. A similarity matrix, with the number of protein sequences contained in each cluster for each genome, was construc […]

call_split

Comparative Correlation Structure of Colon Cancer Locus Specific Methylation: Characterisation of Patient Profiles and Potential Markers across 3 Array Based Datasets

2015
PMCID: 4504116
PMID: 26185542
DOI: 10.7150/jca.9883
call_split See protocol

[…] The R software was used to manage the data and analyses. R libraries, used for clustering, included: 'bclust' (Bayesian clustering); 'amap' (for the distance measure); 'heatplus' (annotated heatmaps) and 'pvcclust' (cluster bootstrapping). Non-centred and non-scaled Principal Component Analyses, used […]

BCLUST institution(s)
Department of Epidemiology and Public Health, Yale University School of Medicine, New Haven, CT, USA
BCLUST funding source(s)
Supported, in part, by grants MG59507 and HD36834 from the National Institutes of Health and Research Grant FY98–0752 from the March of Dimes Birth Defects Foundation.

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