BCPREDS statistics

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Citations per year

Number of citations per year for the bioinformatics software tool BCPREDS
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Tool usage distribution map

This map represents all the scientific publications referring to BCPREDS per scientific context
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Associated diseases

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Popular tool citations

chevron_left Sequence-based B-cell epitope prediction chevron_right
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Protocols

BCPREDS specifications

Information


Unique identifier OMICS_08223
Name BCPREDS
Interface Web user interface
Restrictions to use None
Input data Primary sequence (amino acid sequence in plain format)
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Yasser El-Manzalawy

Publications for BCPREDS

BCPREDS citations

 (42)
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Immune Informatic Analysis and Design of Peptide Vaccine From Multi epitopes Against Corynebacterium pseudotuberculosis

2018
Bioinform Biol Insights
PMCID: 5954444
PMID: 29780242
DOI: 10.1177/1177932218755337
call_split See protocol

[…] le methods (http://www.cbs.dtu.dk/services/BepiPred/). Furthermore, ABCPred, based on learning methods of the machine, applies recurrent neural network (http://www.imtech.res.in/raghava/abcpred), and BCPreds, which are also based on the learning ability of the machine, applies to support vector machines (http://ailab.cs.iastate.edu/bcpreds/) and the Immune Epitope Database and Analysis Resource (I […]

library_books

Investigation of immunogenic properties of Hemolin from silkworm, Bombyx mori as carrier protein: an immunoinformatic approach

2018
Sci Rep
PMCID: 5934409
PMID: 29725106
DOI: 10.1038/s41598-018-25374-z

[…] epitope than nonepitope sequence. BCPred method employs subsequence kernel-based SVM classifier. The performance of BCPred (AUC 0.758) outperforms implementation of AAP (AUC 0.7). The cutoff score of BCPreds is >0.8 for prediction of linear B-cell epitopes FBCPred is a novel method developed for prediction of B-cell epitopes with flexible length. B-cell discontinuous epitopes prediction of the hem […]

library_books

Autoimmunity to Tropomyosin Specific Peptides Induced by Mycobacterium leprae in Leprosy Patients: Identification of Mimicking Proteins

2018
Front Immunol
PMCID: 5891605
PMID: 29666623
DOI: 10.3389/fimmu.2018.00642

[…] BCPREDS server 1.0 was used (aap prediction method) to identify B cell epitopes of the mimicking proteins. Predicted B cell epitope length was of 20 amino acids and classifier specificity used was 75% […]

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Homology modeling and epitope prediction of Der f 33

2018
Braz J Med Biol Res
PMCID: 5875910
PMID: 29561952
DOI: 10.1590/1414-431X20186213
call_split See protocol

[…] ABCpred (), BCPreds (), BcePred (), and Bioinformatics Predicted Antigenic Peptides (BPAP) system () were used for predicting B cell epitopes of Der f 33. ABCpred predicted B cell epitopes in antigen sequences, u […]

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Epitope Mapping of Streptococcus agalactiae Elongation Factor Tu Protein Recognized by Human Sera

2018
Front Microbiol
PMCID: 5808131
PMID: 29467739
DOI: 10.3389/fmicb.2018.00125
call_split See protocol

[…] iction: Antibody Epitope Prediction applied methods—Emini Surface Accessibility Prediction (), Kolaskar & Tongaonkar Antigenicity () and Bepipred Linear Epitope Prediction (), as another cross method BCPREDS was used from B-cell epitope prediction server. For more detailed predictions, we used homology models made based on 3D structure of PDB: 2C78 [elongation factor Tu (EF-TU) complexed with a GT […]

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Novel Immunoinformatics Approaches to Design Multi epitope Subunit Vaccine for Malaria by Investigating Anopheles Salivary Protein

2018
Sci Rep
PMCID: 5773588
PMID: 29348555
DOI: 10.1038/s41598-018-19456-1
call_split See protocol

[…] B lymphocytes, a type of white blood cells, are the key player of humoral immunity by antibody production. The identification of B-cell epitopes is an essential part in vaccine designing. BCPREDS server was used to predict the linear B-cell epitopes of 20 amino acids long. The amino acid sequence of final vaccine construct was used as an input sequence in plain format followed by the s […]


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BCPREDS institution(s)
Artificial Intelligence Laboratory, Iowa State University, Ames, IA, USA

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