Computational protocol: Return of pandemic H1N1 influenza virus

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Protocol publication

[…] For the phylogenetic analysis, influenza hemagglutinin protein-specific primers were used by WHO Swine genome set [] (Table ). The Sequencher® 5.0 program (Gencodes Corporation, Ann Arbor, MI) was used to compare the nucleotide sequences. Phylogenetic trees were prepared by nearest neighbor joining analysis using Clustal X with 1000 bootstraps and trees were visualized using TreeView or NJ plot software. The sequences were submitted to the NCBI. […]

Pipeline specifications

Software tools Sequencher, Clustal W, TreeViewX
Application Phylogenetics
Organisms Homo sapiens
Diseases Infection, HIV Infections