Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 8
Release date: Sep 22 2017
Last update date: Jan 24 2018
Access: Public
Diseases: Whooping Cough
Dataset link The BvgAS-dependent regulon of Bordetella pertussis

Experimental Protocol


Two strains were used to identify the bvgAS regulon: WT and an isogenic ΔbvgAS derivative. No MgSO4 or addition of 50 mM MgSO4 to the growth medium was used to generate the BvgA+ mode (presence of BvgA phosphorylation) or the Bvg- mode (absence of BvgA phosphorylation), respectively. B. pertussis mRNA profiles were generated by deep sequencing, in duplicates, using Illumina ScriptSeq 2.0 kit.

Repositories


GEO

GSE98155

ENA

SRP105177

BioProject

PRJNA384170

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Contact


Deborah Hinton

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