BDB specifications

Dataset

Information

Unique identifier OMICS_11128
Name BDB
Alternative names Biopanning Data Bank, MimoDB, MimoDB 2.0
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Allowed
Maintained Yes

Subtools

  • MimoBlast
  • MimoScan
  • MimoSearch
  • TUPredict
  • TUPScan

Maintainer

  • person_outline iTree Team

Additional information

http://immunet.cn/bdb/index.php/help/index

Publications for Biopanning Data Bank

library_books

BDB: biopanning data bank

2016 Nucleic Acids Res
PMCID: 4702802
PMID: 26503249
DOI: 10.1093/nar/gkv1100

BDB citations

 (2)
library_books

Peptide Vaccine: Progress and Challenges

2014
PMCID: 4494216
PMID: 26344743
DOI: 10.3390/vaccines2030515

[…] cted peptide antigens can be further sequenced and aligned with antigen sequence, and if available, 3D structures can be superimposed. Some algorithms that can be of use are MimoPro, Mimox, Pepitope, MimoDB 2.0 []; Prediction of linear B cell epitopes using computerized algorithms such as propensity scale, machine-learning algorithm or a combination of these two, hybrid algorithm, ABCpred, ANN-, B […]

library_books

GuiTope: an application for mapping random sequence peptides to protein sequences

2012
BMC Bioinformatics
PMCID: 3280184
PMID: 22214541
DOI: 10.1186/1471-2105-13-1

[…] s are likely considerably more difficult than phage display datasets because of sparse sampling of sequence space.Phage display datasets evaluated in GuiTope were selected based on the summary of the MimoDB published in Derda et al. []. Two of these datasets consisted of peptides selected to polyclonal sera. The phage display peptides selected against the anti-Nipah virus were used to map three ep […]

BDB institution(s)
Center of Bioinformatics (COBI), Key Laboratory for NeuroInformation of Ministry of Education, University of Electronic Science and Technology of China, Chengdu, China; Center for Information in Biomedicine, University of Electronic Science and Technology of China, Chengdu, China; School of Computer Science & Engineering, University of Electronic Science and Technology of China, Chengdu, China
BDB funding source(s)
National Natural Science Foundation of China [61071177 and 61571095]; Program for New Century Excellent Talents in University [NCET-12-0088]; Applied Basic Research Fund of Sichuan Province of China [2014JY0167]

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