BDPC statistics

Tool stats & trends

Looking to identify usage trends or leading experts?

Protocols

BDPC specifications

Information


Unique identifier OMICS_23359
Name BDPC
Alternative name Bisulfite sequencing Data Presentation and Compilation
Software type Application/Script
Interface Web user interface
Restrictions to use None
Programming languages PHP
Computer skills Basic
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Publication for Bisulfite sequencing Data Presentation and Compilation

BDPC citations

 (23)
call_split

Mechanisms by Which 17β Estradiol (E2) Suppress Neuronal cox 2 Gene Expression

2016
PLoS One
PMCID: 5010190
PMID: 27588681
DOI: 10.1371/journal.pone.0161430
call_split See protocol

[…] ed and methylation data was analyzed by comparison to the original DNA sequence to identify modified cytosine residues. Data was analyzed using the BISMA software (http://biochem.jacobs-university.de/BDPC/BISMA). […]

call_split

Decreased expression of connective tissue growth factor in non small cell lung cancer is associated with clinicopathological variables and can be restored by epigenetic modifiers

2016
PMCID: 4978771
PMID: 27393180
DOI: 10.1007/s00432-016-2195-3
call_split See protocol

[…] rmed with plasmids. Plasmid DNA isolated from five positive bacterial clones was used for commercial sequencing. The results of bisulfite sequencing were presented using BiQ analyzer software and the Bisulfite sequencing Data Presentation and Compilation (BDPC) web server, respectively (Bock et al. ; Rohde et al. ). […]

library_books

BMP Inhibition in Seminomas Initiates Acquisition of Pluripotency via NODAL Signaling Resulting in Reprogramming to an Embryonal Carcinoma

2015
PLoS Genet
PMCID: 4520454
PMID: 26226633
DOI: 10.1371/journal.pgen.1005415

[…] BDPC analysis and STRING protein-protein-interaction prediction were performed online using default settings (services.ibc.uni-stuttgart.de/BDPC) (string-db.org) [] []. GeneTrail-based GO analysis was […]

library_books

DNA methylation and histone modifications regulate SOX11 expression in lymphoid and solid cancer cells

2015
BMC Cancer
PMCID: 4403777
PMID: 25880212
DOI: 10.1186/s12885-015-1208-y

[…] p. Sequences with poor conversion rates (<95%) and identical clones, possibly generated in the PCR reaction, were removed. Data presentation images and methylation statistics were generated using the BDPC web server []. […]

call_split

Individual epigenetic status of the pathogenic D4Z4 macrosatellite correlates with disease in facioscapulohumeral muscular dystrophy

2015
Clin Epigenetics
PMCID: 4405830
PMID: 25904990
DOI: 10.1186/s13148-015-0072-6
call_split See protocol

[…] rst PCR product. PCR products were cloned into the pGEM-T Easy vector (Promega, Madison, WI, USA), sequenced, and analyzed using web-based analysis software BISMA (http://biochem.jacobs-university.de/BDPC/BISMA/) [] with the default parameters. […]

library_books

Clinical significance of DNA methylation mRNA levels of TET family members in colorectal cancer

2015
PMCID: 4469774
PMID: 25557833
DOI: 10.1007/s00432-014-1901-2

[…] d from five positive bacterial clones was used for commercial sequencing of the cloned fragment of DNA. The results of bisulfite sequencing were assessed and presented using BiQ analyzer software and bisulfite sequencing data presentation and compilation (BDPC) web server, respectively (Bock et al. ; Rohde et al. ). […]

Citations

Looking to check out a full list of citations?

BDPC institution(s)
School of Engineering and Science, Jacobs University Bremen, Bremen, Germany; Max Planck Institute for Molecular Genetics, Berlin-Dahlem, Germany
BDPC funding source(s)
Supported by a grant of the German minister of education and research (NGFN-2 program).

BDPC reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review BDPC