BeadDataPackR specifications


Unique identifier OMICS_02023
Name BeadDataPackR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Illumina
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes


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Publication for BeadDataPackR

BeadDataPackR in publications

PMCID: 3228778
PMID: 22144879
DOI: 10.1371/journal.pcbi.1002276

[…] are required. currently, the beadarray package is the only bioconductor package that can process these raw data either in the form obtained from the scanner or in a compact representation via the beaddatapackr package ., the import of raw data is handled using the readillumina function. the availability of tiff images depends on scanner settings (jpegs are provided by default), […]

PMCID: 2880029
PMID: 20423502
DOI: 10.1186/1471-2105-11-208

[…] locations of the beads that were not decoded, and the .sdf file that contains details of the chip structure. to reduce download sizes the .txt and .locs file have been compressed using the package beaddatapackr []. instructions for obtaining bead-level data from the scanner can also be found on our website., all analyses were conducted in r, primarily through the beadarray package []. […]

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BeadDataPackR institution(s)
Department of Oncology, University of Cambridge, Cancer Research UK Cambridge Research Institute, Robinson Way, Cambridge, UK

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