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BEDOPS | High-performance genomic feature operations

A software suite for common genomic analysis tasks which offers improved flexibility, scalability and execution time characteristics over previously published packages. The suite includes a utility to compress large inputs into a lossless format that can provide greater space savings and faster data extractions than alternatives.

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BEDOPS classification

BEDOPS specifications

Unique identifier:
Command line interface
Input data:
BEDOPS supports a relaxed variation of the BED specification, to which several popular formats, including WIG, SAM/BAM, VCF and GFF, readily convert. Thus, data currently stored in any of these formats can be transformed and analyzed using features offered by BEDOPS.
GNU General Public License version 2.0
Software type:
Restrictions to use:
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:

BEDOPS distribution


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BEDOPS support



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Department of Genome Sciences, University of Washington, Seattle, WA, DC, USA; Department of Medicine, University of Washington, Seattle, WA, DC, USA

Funding source(s)

National Institutes of Health Grants (1U54HG004592 and 5U01ES017156)

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