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BEDOPS | High-performance genomic feature operations

A software suite for common genomic analysis tasks which offers improved flexibility, scalability and execution time characteristics over previously published packages. The suite includes a utility to compress large inputs into a lossless format that can provide greater space savings and faster data extractions than alternatives.

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BEDOPS classification

BEDOPS specifications

Unique identifier:
OMICS_00949
Interface:
Command line interface
Input data:
BEDOPS supports a relaxed variation of the BED specification, to which several popular formats, including WIG, SAM/BAM, VCF and GFF, readily convert. Thus, data currently stored in any of these formats can be transformed and analyzed using features offered by BEDOPS.
License:
GNU General Public License version 2.0
Version:
2.4.15
Maintained:
Yes
Software type:
Framework/Library
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Stability:
Stable

BEDOPS distribution

versioning

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BEDOPS support

Documentation

Credits

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Publications

Institution(s)

Department of Genome Sciences, University of Washington, Seattle, WA, DC, USA; Department of Medicine, University of Washington, Seattle, WA, DC, USA

Funding source(s)

National Institutes of Health Grants (1U54HG004592 and 5U01ES017156)

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