BEERS specifications

Information


Unique identifier OMICS_01364
Name BEERS
Alternative name Benchmarker for Evaluating the Effectiveness of RNA-Seq Software
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Input data Pool of gene model, feature quantifications file
Output data DNA and Protein sequence alignment
Output format FASTA
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Requirements Math::Random
Maintained Yes

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Publication for Benchmarker for Evaluating the Effectiveness of RNA-Seq Software

BEERS institution(s)
Penn Center for Bioinformatics, University of Pennsylvania School of Medicine, Philadelphia, PA, USA; Institute for Translational Medicine and Therapeutics, University of Pennsylvania School of Medicine, Philadelphia, PA, USA; Department of Genetics, University of Pennsylvania School of Medicine, Philadelphia, PA, USA; F.M. Kirby Center for Molecular Ophthalmology, University of Pennsylvania School of Medicine, Philadelphia, PA, USA; Department of Pharmacology, University of Pennsylvania School of Medicine, Philadelphia, PA, USA
BEERS funding source(s)
This work was supported by the National Institutes of Health (EY020902, EY12910, F32 EY020747); Foundation Fighting Blindness (USA); Rosanne Silbermann Foundation; Penn Genome Frontiers Institute; Institute for Translational Medicine and Therapeutics; EuPath DB Project.

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