BeReTa specifications


Unique identifier OMICS_12835
Name BeReTa
Alternative name Beneficial Regulator Targeting
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages MATLAB
Computer skills Advanced
Stability Stable
COBRA toolbox
Source code URL
Maintained Yes


No version available



  • person_outline Byung-Gee Kim

Publication for Beneficial Regulator Targeting

BeReTa citation


Genome scale modeling of yeast: chronology, applications and critical perspectives

FEMS Yeast Res
PMCID: 5812505
PMID: 28899034
DOI: 10.1093/femsyr/fox050

[…] rkya and Maranas ; Ranganathan, Suthers and Maranas ; Yang, Cluett and Mahadevan ), to the exploitation of transcriptional regulatory targets—using integrated (OptORF: Kim and Reed ) or unintegrated (BeReTa: Kim et al.) networks of metabolism and transcriptional regulation—today, we can find over 30 different CSOMs in the literature. For a comprehensive review on this topic, see Maia, Rocha and Ro […]

BeReTa institution(s)
School of Chemical and Biological Engineering, Institute of Molecular Biology and Genetics, and Bioengineering Institute, Seoul National University, Seoul, Korea; Department of Chemical and Biomolecular Engineering, National University of Singapore, Singapore, Singapore; Bioprocessing Technology Institute; Agency for Science, Technology and Research (A*STAR), Singapore, Singapore
BeReTa funding source(s)
This research was supported by the National Research Foundation of Korea (NRF) funded by the Ministry of Science, ICT & Future Planning (NRF-2013R1A2A2A01069197, NRF-2014K1A3A1A20034749); the project of Global Ph.D. Fellowship which NRF conducts from 2012 (NRF-2012H1A2A1001956); the Synthetic Biology Initiative (DPRT/943/09/14) and the Academic Research Fund (R-279-000-476-112) of the National University of Singapore.

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