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BetaTPred specifications

Information


Unique identifier OMICS_06641
Name BetaTPred
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 2.0
Stability Stable
Maintained Yes

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Information


Unique identifier OMICS_06641
Name BetaTPred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 2.0
Stability Stable
Maintained Yes

Publications for BetaTPred

BetaTPred in publications

 (4)
PMCID: 3859822
PMID: 24348024
DOI: 10.4137/BBI.S12276

[…] pair of chains between template and match structure., secondary structures of cd36 [127–279aa] and 1hmt were compared using ucsf chimera program, which gives the consensus sequence., psipred, betatpred2, and gammapred servers were used to predict the secondary structure of the target sequence, recognize helix, and strand and coil regions., expasy protparam server determined the percentage […]

PMCID: 3908855
PMID: 24565438
DOI: 10.1186/1477-5956-11-S1-S5

[…] which is based on propensities and multiple alignments. coudes also utilizes secondary structure predicted by psipred [], sspro2 [], and prof []. the machine learning methods include btpred [], betatpred2 [], molebrnn [] and netturnp [], which are based on artificial neural networks (anns), kim's method based on k-nearest neighbor (knn) [], as well as support vector machines (svms) based […]

PMCID: 3155507
PMID: 21749732
DOI: 10.1186/1471-2105-12-283

[…] information predicted by psipred [] and sspro2 [] were utilized by coudes to improve the accuracy of prediction. the second category, based on machine-learning approaches, includes btpred [], betatpred2 [,], and molebrnn [], which are based on artificial neural networks (ann), kim's method [] based on k-nearest neighbor (knn), as well as the most recent prevailing method based on support […]

PMCID: 2613158
PMID: 18847492
DOI: 10.1186/1471-2105-9-430

[…] sspro2 [], and prof [] and the flanking residues around the β-turn tetrapeptide were also utilized by coudes to improve the prediction accuracy., machine learning based methods include btpred [], betatpred2 [,], and molebrnn [] which are based on artificial neural networks (ann), kim's method [] which utilizes k-nearest neighbor (knn), and four methods based on support vector machines (svms) […]


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BetaTPred institution(s)
Institute of Microbial Technology, Chandigarh, India

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