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chevron_left Secondary structure prediction Transmembrane beta-barrel prediction chevron_right
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BetaTPred specifications

Information


Unique identifier OMICS_06641
Name BetaTPred
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 2.0
Stability Stable
Maintained Yes

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Unique identifier OMICS_06641
Name BetaTPred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 2.0
Stability Stable
Maintained Yes

Publications for BetaTPred

BetaTPred citations

 (4)
library_books

Three Dimensional Structure Prediction of Fatty Acid Binding Site on Human Transmembrane Receptor CD36

2013
PMCID: 3859822
PMID: 24348024
DOI: 10.4137/BBI.S12276

[…] pair of chains between template and match structure., secondary structures of cd36 [127–279aa] and 1hmt were compared using ucsf chimera program, which gives the consensus sequence., psipred, betatpred2, and gammapred servers were used to predict the secondary structure of the target sequence, recognize helix, and strand and coil regions., expasy protparam server determined the percentage […]

library_books

Predicting beta turns in proteins using support vector machines with fractional polynomials

2013
PMCID: 3908855
PMID: 24565438
DOI: 10.1186/1477-5956-11-S1-S5

[…] which is based on propensities and multiple alignments. coudes also utilizes secondary structure predicted by psipred [], sspro2 [], and prof []. the machine learning methods include btpred [], betatpred2 [], molebrnn [] and netturnp [], which are based on artificial neural networks (anns), kim's method based on k-nearest neighbor (knn) [], as well as support vector machines (svms) based […]

library_books

Improving the performance of β turn prediction using predicted shape strings and a two layer support vector machine model

2011
PMCID: 3155507
PMID: 21749732
DOI: 10.1186/1471-2105-12-283

[…] information predicted by psipred [] and sspro2 [] were utilized by coudes to improve the accuracy of prediction. the second category, based on machine-learning approaches, includes btpred [], betatpred2 [,], and molebrnn [], which are based on artificial neural networks (ann), kim's method [] based on k-nearest neighbor (knn), as well as the most recent prevailing method based on support […]

library_books

Prediction of beta turns at over 80% accuracy based on an ensemble of predicted secondary structures and multiple alignments

2008
PMCID: 2613158
PMID: 18847492
DOI: 10.1186/1471-2105-9-430

[…] sspro2 [], and prof [] and the flanking residues around the β-turn tetrapeptide were also utilized by coudes to improve the prediction accuracy., machine learning based methods include btpred [], betatpred2 [,], and molebrnn [] which are based on artificial neural networks (ann), kim's method [] which utilizes k-nearest neighbor (knn), and four methods based on support vector machines (svms) […]


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BetaTPred institution(s)
Institute of Microbial Technology, Chandigarh, India

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