BetAware specifications

Information


Unique identifier OMICS_16374
Name BetAware
Interface Web user interface
Restrictions to use None
Input data The protein sequence.
Input format FASTA
Output data The predicted TMBB, the predicted topology.
Output format FASTA
Programming languages Python
Computer skills Basic
Stability Stable
Source code URL http://biocomp.unibo.it/savojard/betawarecl/betaware.tar.gz
Maintained Yes

Maintainer


  • person_outline Castrense Savojardo

Information


Unique identifier OMICS_16374
Name BetAware
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data The protein sequence.
Input format FASTA
Output data The predicted TMBB, the predicted topology.
Output format FASTA
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements
Argparse library, numpy, scipy
Source code URL http://biocomp.unibo.it/savojard/betawarecl/betaware.tar.gz
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Castrense Savojardo

Publication for BetAware

BetAware citations

 (2)
library_books

Characterization of a Novel Porin Like Protein, ExtI, from Geobacter sulfurreducens and Its Implication in the Reduction of Selenite and Tellurite

2018
Int J Mol Sci
PMCID: 5877670
PMID: 29534491
DOI: 10.3390/ijms19030809

[…] nd TREE programs in the GenomeNet database (available online: http://www.genome.jp/). TMHMM (available online: http://www.cbs.dtu.dk/services/TMHMM/) [,] was used for transmembrane region prediction, BetAware (available online: https://betaware.biocomp.unibo.it/BetAware/) [] was used for transmembrane β-barrel detection, and CFSSP (available online: http://www.biogem.org/tool/chou-fasman/) [] was […]

library_books

Identification of OmpA, a Coxiella burnetii Protein Involved in Host Cell Invasion, by Multi Phenotypic High Content Screening

2014
PLoS Pathog
PMCID: 3961360
PMID: 24651569
DOI: 10.1371/journal.ppat.1004013

[…] tructured loops (L1 to L4), exposed at the cell surface (). This prediction was confirmed by analyzing the sequence of the protein using TMpred (http://www.ch.embnet.org/software/TMPRED_form) and the BetAware software . Sequence analysis indicated that transposon insertions occurred in the distal part of the CDS, within the 4th and 6th beta sheets, with mutants Tn27 and Tn907 presenting insertions […]

BetAware institution(s)
Biocomputing Group, CIRI-Health Science and Technology/Department of Biology, University of Bologna, Bologna, Italy; Department of Computer Science and Engineering, University of Bologna, Bologna, Italy
BetAware funding source(s)
This work was supported by the following grants: PRIN 2009 project 009WXT45Y (MIUR), PON project PON01_02249 and COST BMBS Action TD1101(EU-RTD Programme).

BetAware reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review BetAware