Computational protocol: Ehrlichia chaffeensis TRP120 nucleomodulin binds DNA with disordered tandem repeat domain

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Protocol publication

[…] The sequence of TRP120 was analyzed by the ExPASy bioinformatics resource portal []. The program ProtParam [] was used to determine the molecular weights and isoelectric points. The secondary structure prediction programs Jpred [], SsPro [], Porter [], and Gor4 [] were used to predict the secondary structure content of a single 80 amino acid TR unit. Disordered region prediction programs PrDOS [], IUPred [], DisEMBL [], PredictProtein [] were used to predict the disordered regions in TRP120. […]

Pipeline specifications

Software tools ProtParam, JPred, SSpro, PrDOS, IUPred, DisEMBL, PP
Databases ExPASy
Applications Protein structure analysis, Protein physicochemical analysis
Organisms Homo sapiens
Chemicals Amino Acids