Computational protocol: Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana

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Protocol publication

[…] Sequences of telobox containing proteins were obtained from indicated plant genomes by using http://www.phytozome.net, protein BLAST searches with the A. thaliana TRFL6 protein sequence as a query. Proteins were aligned by the ClustalW method and phylogenetic trees were constructed by Neighbor Joining method using CLC Main Workbench software (Qiagen). […]

Pipeline specifications

Software tools DELTA-BLAST, Clustal W, CLC Main Workbench
Databases Phytozome
Applications Phylogenetics, Amino acid sequence alignment
Organisms Arabidopsis thaliana
Diseases Liver Diseases