Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 12
Release date: Feb 9 2015
Last update date: Sep 13 2018
Access: Public
Genes: SF3A1, MYD88, Sf3a1
Taxon: Mus musculus
Dataset link Effect of SF3A1 inhibition on pre-mRNA splicing

Experimental Protocol


RNAseq was used to monitor the effects of SF3A1 siRNA-mediated knockdown in murine macrophages. Three biological replicates were used for each of the four treatment combinations (with/without siRNA, with/without LPS). The first replicates for each combination were each sequenced in two runs, which were combined in the analysis.

Repositories


GEO

GSE58432

ArrayExpress

E-GEOD-58432

ENA

SRP043160

BioProject

PRJNA252602

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Contact


Scott Alper

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