BG7 protocols

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BG7 specifications

Information


Unique identifier OMICS_09590
Name BG7
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Parallelization MapReduce
License GNU Affero General Public License version 3
Computer skills Advanced
Stability Stable
High performance computing Yes
Maintained Yes

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  • person_outline BG7 <>

Publications for BG7

BG7 in pipeline

2018
PMCID: 5807354
PMID: 29426864
DOI: 10.1038/s41598-018-20843-x

[…] illumina hiseq and pacbio biosciences (supplementary materials), were used., draft genomes were assembled de novo (combining both platforms) using spades software (abl) and annotated using the bg7 bacterial genome annotation pipeline. to assign gene function, the hit with the lowest e-value obtained after analysis against the uniprot database was chosen. the draft genomes […]


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BG7 in publications

 (6)
PMCID: 5391406
PMID: 28408668
DOI: 10.1128/genomeA.00132-17

[…] off at the left end. filtered sequences were assembled with spades () using pair-end and mate-pair libraries. final assembly was evaluated with quast (). genome assemblies were annotated with the bg7 tool (), using gene and protein sequences from the halomonadaceae family as reference, which included 62,441 protein sequences from uniprot. aditionally, an automatic gene annotation was carried […]

PMCID: 4299889
PMID: 25593247
DOI: 10.1128/genomeA.01343-14

[…] 339.356 nucleotides and a total length of 6,364,167 bp; the g+c content is 66.3%, similar to that of other p. aeruginosa sequenced genomes. the assemblies obtained were annotated using the era7 tool bg7 (). a total of 5,761 coding sequences (cds) and 67 trna genes were identified in pae221. using the harvest alignment tool (), we determined that the most similar genome to pae221 (91%) […]

PMCID: 4208338
PMID: 25342694
DOI: 10.1128/genomeA.01088-14

[…] in 243 contigs ranging from 202 to 239,606 bp. the total sequence length was 2,801,031 bp, with a g+c content of 35.4%. annotation was performed by era7 bioinformatics (granada, spain) using the bg7 pipeline (), and improved using blast analysis results (http://blast.ncbi.nlm.nih.gov). the genome contained 2,765 predicted coding sequences. predicted copies of the 16s, 23s, and 5s rrna genes […]

PMCID: 3951458
PMID: 24621776
DOI: 10.1371/journal.pone.0091668

[…] methods for identifying protein coding regions include glimmer , , genemarkhmm , , and prodigal , and programs which transfer information directly from closely related genomes such as ratt and bg7 . studies have demonstrated that purely bioinformatics-based pipelines fail to annotate short-length proteins , and high g+c content sequences , , . other scientists have also found […]

PMCID: 3855842
PMID: 24324765
DOI: 10.1371/journal.pone.0082210

[…] was carried out in bgi (the strain ty2482) and multiple groups annotated this sequence. the annotation produced by aamg pipeline for e. coli ty2482 is compared with annotations available from bg7 []. bg7 pipeline compared the annotations considering an annotations set available from broad institute website, […]


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BG7 institution(s)
Oh no sequences! Research group, Era7 Bioinformatics, Granada, Spain

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